Oncotator
http://www.broadinstitute.org/oncotator
https://github.com/broadinstitute/oncotator
Useful listing of data sources, viz:
QT:{{”
Protein Annotations
Site-specific protein annotations from UniProt.
Druggable target data from DrugBank.
Functional impact predictions from PolyPhen-2.
Cancer Annotations
Observed cancer mutation frequency annotations from COSMIC.
Cancer gene and mutation annotations from the Cancer Gene Census. Significant amplification/deletion region annotations from Tumorscape and theTCGA Copy Number Portal.
Overlapping Oncomap mutations from the Cancer Cell Line Encyclopedia. Significantly mutated gene annotations aggregated from published MutSiganalyses. Cancer gene annotations from the Familial Cancer Database.
Human DNA Repair Gene annotations from Wood et al.
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Uses bamboo testing software
https://www.atlassian.com/software/bamboo